X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP295Formate
Crystal Properties
Matthews coefficientSolvent content
2.97158.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.26α = 90
b = 92.26β = 90
c = 231.46γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2018-04-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U10.9791SSRFBL17U1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9872.24699.70.0310.99714.425.770317
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.982.030.2210.78

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE7C8X1.9872.24670226352499.6550.1840.18250.210639.61
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.5370.537-1.073
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.804
r_dihedral_angle_3_deg16.48
r_dihedral_angle_4_deg16.446
r_lrange_it6.098
r_lrange_other6.09
r_dihedral_angle_1_deg5.805
r_scangle_it5.25
r_scangle_other5.249
r_scbond_it3.84
r_scbond_other3.838
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.804
r_dihedral_angle_3_deg16.48
r_dihedral_angle_4_deg16.446
r_lrange_it6.098
r_lrange_other6.09
r_dihedral_angle_1_deg5.805
r_scangle_it5.25
r_scangle_other5.249
r_scbond_it3.84
r_scbond_other3.838
r_mcangle_other3.723
r_mcangle_it3.722
r_mcbond_it2.904
r_mcbond_other2.904
r_angle_other_deg2.286
r_angle_refined_deg1.691
r_symmetry_nbd_other0.223
r_xyhbond_nbd_refined0.214
r_nbd_refined0.202
r_nbd_other0.198
r_nbtor_refined0.184
r_symmetry_xyhbond_nbd_other0.17
r_symmetry_xyhbond_nbd_refined0.16
r_symmetry_nbd_refined0.153
r_chiral_restr0.092
r_symmetry_nbtor_other0.078
r_bond_other_d0.036
r_metal_ion_refined0.023
r_bond_refined_d0.014
r_gen_planes_refined0.004
r_gen_planes_other0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4951
Nucleic Acid Atoms
Solvent Atoms348
Heterogen Atoms26

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing