☰ Navigation Tabs
c-Myc DNA binding protein structure
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 14 1D 1H 1 mM [U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 2 2D 1H-15N HSQC 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 3 2D 1H-13C HSQC aliphatic 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 4 2D 1H-13C HSQC aromatic 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 1 3D HNCA 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 5 3D CBCA(CO)NH 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 7 3D C(CO)NH 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 6 3D HNCO 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 9 3D HNCACB 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 12 3D HN(CA)CO 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 8 3D 15N-edited [1H,1H]-NOESY 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 11 3D 13Caro-edited [1H,1H]-NOESY 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 13 3D 13Cali-edited [1H,1H]-NOESY 1 mM [U-13C; U-15N] protein 100% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 500.15 10 3D 13Cali-edited [1H,1H]-NOESY 1 mM [U-13C; U-15N] protein 90% H2O/10% D2O 100 mM 7.1 1 atm 303 Bruker AVANCE III 800.18
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 500.15 2 Bruker AVANCE III 800.18
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 10000 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.1 Bruker Biospin 2 processing TopSpin 3.1 Bruker Biospin 3 peak picking CARA Keller and Wuthrich 4 data analysis CARA Keller and Wuthrich 5 structure calculation CYANA 3.98.13 Guntert, Mumenthaler and Wuthrich 6 refinement Amber 18 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 7 chemical shift assignment CARA Keller and Wuthrich