7BWC

Bombyx mori GH32 beta-fructofuranosidase BmSUC1 mutant D63A in complex with sucrose

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.4	293	13% PEG 3350, 40 mM citric acid, 60 mM Bis-Tris propane

Crystal Properties
Matthews coefficient	Solvent content
2.58	52.36

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 96.522	α = 90
b = 118.459	β = 90
c = 101.285	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2019-11-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE BL-5A	1	Photon Factory	BL-5A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.95	50	99.9	0.063	13.1	6.4		42574

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.95	2.06			0.661	2.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1UYP	1.95	41.975	40878	2032	95.98	0.217	0.2159	0.2469	50.272

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
5.133			-3.174		-1.959

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.837
r_dihedral_angle_3_deg	13.509
r_dihedral_angle_4_deg	12.103
r_dihedral_angle_1_deg	8.424
r_lrange_it	3.689
r_lrange_other	3.637
r_scangle_it	1.826
r_scangle_other	1.826
r_mcangle_it	1.784
r_mcangle_other	1.784
r_angle_refined_deg	1.318
r_angle_other_deg	1.149
r_scbond_it	1.123
r_scbond_other	1.123
r_mcbond_it	1.085
r_mcbond_other	1.085
r_nbd_other	0.186
r_nbd_refined	0.179
r_symmetry_nbd_other	0.176
r_nbtor_refined	0.168
r_symmetry_nbd_refined	0.137
r_xyhbond_nbd_refined	0.134
r_symmetry_xyhbond_nbd_refined	0.102
r_symmetry_nbtor_other	0.071
r_chiral_restr	0.047
r_bond_refined_d	0.005
r_gen_planes_refined	0.005
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3774
Nucleic Acid Atoms
Solvent Atoms	144
Heterogen Atoms	23

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
MOLREP	phasing