7BSN | pdb_00007bsn

Mevo lectin complex with 3alpha-mannobiose

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7BSB

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROBATCH		296	6%(v/v) Tacsimate pH 6.0, 0.1 M MES monohydrate pH 6.0, 25%(w/v) polyethylene glycol 4000

Crystal Properties
Matthews coefficient	Solvent content
2.88	57.28

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 169.748	α = 90
b = 169.748	β = 90
c = 195.738	γ = 90

Symmetry
Space Group	P 41 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2018-12-11	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	0.9762	ELETTRA	11.2C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.6	97.87	100	0.32	0.74	7.4	24.4		88208

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.6	2.74	100		0.775	2.8	24.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	7BSB	2.6	85.018	88102	4458	99.976	0.217	0.2146	0.22	0.2534	0.25	35.117

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-2.254			-2.254		4.508

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.112
r_dihedral_angle_3_deg	14.119
r_dihedral_angle_4_deg	13.61
r_dihedral_angle_1_deg	8.127
r_lrange_other	7.363
r_lrange_it	7.362
r_scangle_it	5.585
r_scangle_other	5.584
r_mcangle_other	4.954
r_mcangle_it	4.953
r_scbond_it	3.744
r_scbond_other	3.744
r_mcbond_it	3.204
r_mcbond_other	3.204
r_angle_other_deg	2.452
r_angle_refined_deg	1.752
r_nbd_other	0.228
r_symmetry_nbd_other	0.217
r_symmetry_nbd_refined	0.19
r_nbd_refined	0.174
r_nbtor_refined	0.165
r_xyhbond_nbd_refined	0.145
r_symmetry_xyhbond_nbd_refined	0.095
r_symmetry_nbtor_other	0.075
r_chiral_restr	0.068
r_bond_other_d	0.037
r_chiral_restr_other	0.019
r_bond_refined_d	0.012
r_gen_planes_other	0.008
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	14641
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	278

Software

Software
Software Name	Purpose
REFMAC	refinement
iMOSFLM	data reduction
SCALA	data scaling
PHASER	phasing