7BPP

Solution NMR structure of NF5; de novo designed protein with a novel fold


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 800
22D 1H-13C HSQC aliphatic0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 800
32D 1H-13C HSQC aromatic0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 800
43D HNCO0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 800
53D CBCA(CO)NH0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 800
63D HNCACB0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 800
73D HCCH-TOCSY aliphatic0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 800
83D 1H-15N NOESY0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 800
93D 1H-13C NOESY aliphatic0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 800
103D 1H-13C NOESY aromatic0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 800
112D 1H-15N HSQC IPAP0.9 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 950
122D 1H-15N HSQC IPAP0.2 mM [U-100% 13C; U-100% 15N] NF5, 4.3 mM sodium phosphate, 5.7 mM potassium phosphate, 50 mM sodium chloride, 6 mg/mL Pf1 phage95% H2O/5% D2O60 mM6.81 atm303Bruker AVANCE III 950
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III800
2BrukerAVANCE III950
NMR Refinement
MethodDetailsSoftware
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.2Bruker Biospin
2processingNMRPipe2017Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3peak pickingMAGRO2.01.38Kobayashi, N.
4chemical shift assignmentCYANA3.98Guntert, Mumenthaler and Wuthrich
5data analysisNMRView9.0Johnson, One Moon Scientific
6data analysisTALOS2017Cornilescu, Delaglio and Bax
7structure calculationCYANAGuntert, Mumenthaler and Wuthrich
8refinementAmber12Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman