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Human AAA+ ATPase VCP mutant - T76E, AMP-PNP bound form, Conformation I
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.351 f_angle_d 1.051 f_chiral_restr 0.065 f_plane_restr 0.009 f_bond_d 0.006
Sample Transitional endoplasmic reticulum ATPase, VCP.
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 229297 Reported Resolution (Å) 4.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C6
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU CTF CORRECTION RELION 3.0.6 MODEL FITTING PHENIX 1.14 MODEL REFINEMENT PHENIX 1.14 INITIAL EULER ASSIGNMENT cisTEM Beta -1.0.0 FINAL EULER ASSIGNMENT cisTEM Beta -1.0.0 CLASSIFICATION cisTEM Beta -1.0.0 RECONSTRUCTION cisTEM Beta -1.0.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION