☰ Navigation Tabs
CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX with JNJB44355437
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RLQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 PEG3350, 150mM ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.8 56.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.19 α = 90 b = 137.25 β = 90 c = 179.37 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91741 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.83 60.367 99.7 0.992 10 6.2 30068
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.83 2.98 99.1 1.379 0.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6RLQ 2.83 60.367 30067 1310 99.596 0.207 0.205 0.2082 0.25 0.2512 64.138
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.717 2.329 -7.046
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.864 r_dihedral_angle_4_deg 19.965 r_dihedral_angle_3_deg 18.955 r_lrange_it 11.915 r_lrange_other 11.915 r_dihedral_angle_1_deg 7.804 r_mcangle_it 7.783 r_scangle_it 7.783 r_scangle_other 7.783 r_mcangle_other 7.782
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.864 r_dihedral_angle_4_deg 19.965 r_dihedral_angle_3_deg 18.955 r_lrange_it 11.915 r_lrange_other 11.915 r_dihedral_angle_1_deg 7.804 r_mcangle_it 7.783 r_scangle_it 7.783 r_scangle_other 7.783 r_mcangle_other 7.782 r_mcbond_it 5.115 r_mcbond_other 5.109 r_scbond_it 4.952 r_scbond_other 4.952 r_angle_refined_deg 1.568 r_angle_other_deg 1.227 r_symmetry_xyhbond_nbd_refined 0.293 r_nbd_refined 0.206 r_symmetry_nbd_refined 0.199 r_symmetry_nbd_other 0.195 r_nbd_other 0.186 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.166 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.065 r_symmetry_xyhbond_nbd_other 0.026 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7262 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing