☰ Navigation Tabs
Crystal structure of CHK1 complex with adenine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IA8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 10-30% PEG8K
0.1M HEPES pH 7.5
15% isopropanol
Crystal Properties Matthews coefficient Solvent content 2.24 45.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.64 α = 90 b = 65.057 β = 102.81 c = 53.95 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2011-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 1.0000 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.74 52.66 94.9 0.088 0.108 0.061 9.5 2.9 7615
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.74 2.84 96.9 0.537 0.537 0.649 0.36 1.4 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1IA8 2.74 52.66 7220 384 94.73 0.2119 0.2085 0.2094 0.28 0.2829 RANDOM 49.77
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.08 -0.57 1.45 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.412 r_dihedral_angle_3_deg 22.65 r_dihedral_angle_4_deg 21.708 r_dihedral_angle_1_deg 7.202 r_angle_refined_deg 1.541 r_angle_other_deg 1.348 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.412 r_dihedral_angle_3_deg 22.65 r_dihedral_angle_4_deg 21.708 r_dihedral_angle_1_deg 7.202 r_angle_refined_deg 1.541 r_angle_other_deg 1.348 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2027 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 15
Software Software Software Name Purpose DENZO data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction AMoRE phasing