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PI3KC2aDeltaN and DeltaC-C2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E8X 1E8X, 2IWL experimental model PDB 2IWL 1E8X, 2IWL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 0.1MTris, 8% PEG20000, 10% ethylene glycol, 10% formamide
Crystal Properties Matthews coefficient Solvent content 2.63 53.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.557 α = 90 b = 115.887 β = 90 c = 144.365 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-05-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 49.2 99.1 0.152 0.998 9.73 4.9 22257
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.25 3.45 97.1 2.294 0.443 0.84 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1E8X, 2IWL 3.25 49.2 21143 1113 99.1 0.2687 0.2664 0.2624 0.3118 0.3106 RANDOM 137.09
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.34 4.7 -2.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.479 r_dihedral_angle_3_deg 13.626 r_dihedral_angle_4_deg 9.246 r_dihedral_angle_1_deg 4.582 r_angle_refined_deg 1.166 r_angle_other_deg 1.085 r_chiral_restr 0.04 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.479 r_dihedral_angle_3_deg 13.626 r_dihedral_angle_4_deg 9.246 r_dihedral_angle_1_deg 4.582 r_angle_refined_deg 1.166 r_angle_other_deg 1.085 r_chiral_restr 0.04 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8219 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing