7BF7

Mutant L58F of recombinant bovine beta-lactoglobulin in complex with tetracaine


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP82932.8 M ammonium sulfate in 0.5 M Tris-HCl pH 8.0
Crystal Properties
Matthews coefficientSolvent content
2.5251.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.344α = 90
b = 53.344β = 90
c = 111.869γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDAGILENT ATLAS CCD2014-11-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEAgilent SuperNova1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.113.7798.80.0610.0740.0410.9977.92.611130
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1796.80.2850.3910.2650.8051.62

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1BSY2.113.76911107104998.370.2070.207380.20290.2491RANDOM31.557
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0140.0070.014-0.045
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.33
r_dihedral_angle_3_deg15.441
r_dihedral_angle_4_deg15.38
r_dihedral_angle_1_deg7.576
r_lrange_it5.187
r_lrange_other5.157
r_scangle_it3.306
r_scangle_other3.302
r_mcangle_it2.88
r_mcangle_other2.879
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.33
r_dihedral_angle_3_deg15.441
r_dihedral_angle_4_deg15.38
r_dihedral_angle_1_deg7.576
r_lrange_it5.187
r_lrange_other5.157
r_scangle_it3.306
r_scangle_other3.302
r_mcangle_it2.88
r_mcangle_other2.879
r_scbond_it1.935
r_scbond_other1.931
r_mcbond_it1.743
r_mcbond_other1.74
r_angle_refined_deg1.722
r_angle_other_deg1.232
r_nbd_other0.228
r_nbd_refined0.212
r_symmetry_xyhbond_nbd_refined0.212
r_symmetry_nbd_refined0.201
r_symmetry_nbd_other0.186
r_xyhbond_nbd_refined0.183
r_nbtor_refined0.161
r_symmetry_nbtor_other0.08
r_chiral_restr0.078
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1210
Nucleic Acid Atoms
Solvent Atoms74
Heterogen Atoms24

Software

Software
Software NamePurpose
Aimlessdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
CrysalisProdata reduction
PHASERphasing