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Glyceraldehyde 3-phosphate dehydrogenase from Campylobacter jejeuni - NAD(P) complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 295 PEG 4000 (20%), 0.3 M Na/K tartrate, 01.M Na Acetate
Crystal Properties Matthews coefficient Solvent content 3.21 61.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.81 α = 90 b = 90.81 β = 90 c = 224.8 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 64.21 99.9 0.15 10.6 6.5 22791
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.35 100 0.73 2.5 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 2.25 57.797 22778 1173 99.803 0.166 0.1632 0.172 0.2118 0.2207 24.316
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.013 -0.013 0.025
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.976 r_dihedral_angle_3_deg 16.101 r_dihedral_angle_4_deg 14.677 r_dihedral_angle_1_deg 8.145 r_lrange_it 6.658 r_lrange_other 6.554 r_scangle_it 4.874 r_scangle_other 4.873 r_scbond_it 3.088 r_scbond_other 3.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.976 r_dihedral_angle_3_deg 16.101 r_dihedral_angle_4_deg 14.677 r_dihedral_angle_1_deg 8.145 r_lrange_it 6.658 r_lrange_other 6.554 r_scangle_it 4.874 r_scangle_other 4.873 r_scbond_it 3.088 r_scbond_other 3.087 r_mcangle_it 3.049 r_mcangle_other 3.048 r_mcbond_it 2.008 r_mcbond_other 2 r_angle_refined_deg 1.674 r_angle_other_deg 1.355 r_xyhbond_nbd_refined 0.65 r_symmetry_nbd_refined 0.212 r_nbd_refined 0.204 r_symmetry_nbd_other 0.18 r_nbd_other 0.176 r_nbtor_refined 0.159 r_symmetry_xyhbond_nbd_refined 0.143 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.077 r_metal_ion_refined 0.038 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2524 Nucleic Acid Atoms Solvent Atoms 164 Heterogen Atoms 57
Software Software Software Name Purpose REFMAC refinement xia2 data reduction SCALA data scaling REFMAC phasing