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Structure of the FKBP51FK1 domain in complex with the macrocyclic SAFit analogue 63
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 24% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium thiocyanate
Crystal Properties Matthews coefficient Solvent content 1.76 30.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.278 α = 90 b = 47.792 β = 90 c = 61.368 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.976260 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 61.37 90.9 0.08 0.087 0.033 1 12.8 12.5 34112
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.16 1.528 1.658 0.638 0.784 12.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4TW7 1.14 37.003 34058 1731 90.768 0.143 0.1415 0.1623 0.1572 15.859
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.523 -1.155 -0.368
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.711 r_dihedral_angle_4_deg 19.734 r_dihedral_angle_3_deg 11.778 r_dihedral_angle_1_deg 7.52 r_rigid_bond_restr 5.009 r_lrange_it 4.254 r_lrange_other 4.234 r_mcangle_it 3.581 r_mcangle_other 3.579 r_scangle_it 3.456
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.711 r_dihedral_angle_4_deg 19.734 r_dihedral_angle_3_deg 11.778 r_dihedral_angle_1_deg 7.52 r_rigid_bond_restr 5.009 r_lrange_it 4.254 r_lrange_other 4.234 r_mcangle_it 3.581 r_mcangle_other 3.579 r_scangle_it 3.456 r_scangle_other 3.454 r_mcbond_other 3.351 r_mcbond_it 3.348 r_scbond_it 3.253 r_scbond_other 3.25 r_angle_refined_deg 2.129 r_angle_other_deg 1.73 r_chiral_restr_other 1.545 r_symmetry_xyhbond_nbd_other 0.252 r_symmetry_xyhbond_nbd_refined 0.247 r_nbd_other 0.206 r_nbd_refined 0.2 r_symmetry_nbd_other 0.186 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.173 r_symmetry_nbd_refined 0.173 r_chiral_restr 0.114 r_symmetry_nbtor_other 0.09 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.006 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 967 Nucleic Acid Atoms Solvent Atoms 97 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement REFMAC refinement XDS data collection Aimless data reduction Aimless data scaling PHASER phasing