7BA0

Structure of the FKBP51FK1 domain in complex with the macrocyclic SAFit analogue 63


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP29324% PEG3350, 0.1 M HEPES pH 7.5, 0.2 M ammonium thiocyanate
Crystal Properties
Matthews coefficientSolvent content
1.7630.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.278α = 90
b = 47.792β = 90
c = 61.368γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2020-11-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)0.976260PETRA III, EMBL c/o DESYP13 (MX1)

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1461.3790.90.080.0870.033112.812.534112
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.141.161.5281.6580.6380.78412.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4TW71.1437.00334058173190.7680.1430.14150.162315.859
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.523-1.155-0.368
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.711
r_dihedral_angle_4_deg19.734
r_dihedral_angle_3_deg11.778
r_dihedral_angle_1_deg7.52
r_rigid_bond_restr5.009
r_lrange_it4.254
r_lrange_other4.234
r_mcangle_it3.581
r_mcangle_other3.579
r_scangle_it3.456
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.711
r_dihedral_angle_4_deg19.734
r_dihedral_angle_3_deg11.778
r_dihedral_angle_1_deg7.52
r_rigid_bond_restr5.009
r_lrange_it4.254
r_lrange_other4.234
r_mcangle_it3.581
r_mcangle_other3.579
r_scangle_it3.456
r_scangle_other3.454
r_mcbond_other3.351
r_mcbond_it3.348
r_scbond_it3.253
r_scbond_other3.25
r_angle_refined_deg2.129
r_angle_other_deg1.73
r_chiral_restr_other1.545
r_symmetry_xyhbond_nbd_other0.252
r_symmetry_xyhbond_nbd_refined0.247
r_nbd_other0.206
r_nbd_refined0.2
r_symmetry_nbd_other0.186
r_nbtor_refined0.179
r_xyhbond_nbd_refined0.173
r_symmetry_nbd_refined0.173
r_chiral_restr0.114
r_symmetry_nbtor_other0.09
r_bond_refined_d0.02
r_gen_planes_refined0.011
r_bond_other_d0.006
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms967
Nucleic Acid Atoms
Solvent Atoms97
Heterogen Atoms55

Software

Software
Software NamePurpose
REFMACrefinement
REFMACrefinement
XDSdata collection
Aimlessdata reduction
Aimlessdata scaling
PHASERphasing