SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 1 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1 mM NA-H (DC)(DA)(DG)(DC)(DG)(DG)(DC)(DG)(RGT)(DG), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA | 90% H2O/10% D2O | 111 mM | 7.2 | 1 atm | 278.65 | Bruker AVIII 600 |
| 2 | 2D 1H-1H NOESY | 1 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1 mM NA-H (DC)(DA)(DG)(DC)(DG)(DG)(DC)(DG)(RGT)(DG), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA | 100% D2O | 111 M | 7.2 | 1 atm | 303.65 | Bruker AVIII 600 |
| 3 | 2D 1H-1H TOCSY | 1 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1 mM NA-H (DC)(DA)(DG)(DC)(DG)(DG)(DC)(DG)(RGT)(DG), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA | 100% D2O | 111 M | 7.2 | 1 atm | 303.65 | Bruker AVIII 600 |
| 4 | 2D 31P-1H HETCOR | 1 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1 mM NA-H (DC)(DA)(DG)(DC)(DG)(DG)(DC)(DG)(RGT)(DG), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA | 100% D2O | 111 M | 7.2 | 1 atm | 303.65 | Bruker AVIII 600 |
| 5 | 2D 1H-13C HMBC | 1 mM NA-H DNA (5'-D(*CP*AP*CP*GP*CP*CP*GP*CP*TP*G)-3'), 1 mM NA-H (DC)(DA)(DG)(DC)(DG)(DG)(DC)(DG)(RGT)(DG), 10 mM sodium phosphate, 100 mM sodium chloride, 1 mM EDTA | 100% D2O | 111 M | 7.2 | 1 atm | 303.65 | Bruker AVIII 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVIII | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | Amber | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 10 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
| 2 | structure calculation | Amber | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman | |
| 3 | chemical shift assignment | CcpNmr Analysis | 2.4.2 | Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides and Ernest D. Laue |
| 4 | peak picking | CcpNmr Analysis | 2.4.2 | Wim F. Vranken, Wayne Boucher, Tim J. Stevens, Rasmus H. Fogh, Anne Pajon, Miguel Llinas, Eldon L. Ulrich, John L. Markley, John Ionides and Ernest D. Laue |
