7B6I

Crystal structure of MurE from E.coli in complex with Z1373445602

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.5	294	0.1M citrate pH 5.5 19% PEG4K 14% 2-propanol

Crystal Properties
Matthews coefficient	Solvent content
2.26	45.58

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 58.19	α = 97.082
b = 58.426	β = 91.436
c = 74.229	γ = 104.723

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2018-07-13	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.91587	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.02	73.51	91.6	0.998	7.9	1.8		56353

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.02	2.13			0.424

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	7B53	2.069	73.51	55045	2812	96.263	0.206	0.2035	0.2588	44.926

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.572	0.923	-0.083	0.932	2.268	-1.624

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.901
r_dihedral_angle_4_deg	15.73
r_dihedral_angle_3_deg	15.034
r_lrange_it	8.238
r_lrange_other	8.227
r_dihedral_angle_1_deg	7.179
r_scangle_it	6.314
r_scangle_other	6.314
r_mcangle_it	5.204
r_mcangle_other	5.204
r_scbond_it	4.203
r_scbond_other	4.202
r_mcbond_it	3.695
r_mcbond_other	3.694
r_angle_refined_deg	1.529
r_angle_other_deg	1.284
r_nbd_refined	0.208
r_nbd_other	0.18
r_xyhbond_nbd_refined	0.178
r_symmetry_nbd_other	0.177
r_symmetry_xyhbond_nbd_refined	0.173
r_symmetry_nbd_refined	0.17
r_nbtor_refined	0.152
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.067
r_symmetry_xyhbond_nbd_other	0.053
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	7188
Nucleic Acid Atoms
Solvent Atoms	273
Heterogen Atoms	32

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
PHASER	phasing