7B67

Structure of NUDT15 V18_V19insGV Mutant in complex with TH7755

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		294	0.09 M SPG pH 5.0, 22.25% PEG 1500, 0.01 M sodium phosphate, 2.75% 1,2 propandiol, 1.0% glycerol

Crystal Properties
Matthews coefficient	Solvent content
2.45	49.77

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 63.431	α = 90
b = 45.71	β = 115.103
c = 66.339	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2020-02-14	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I24	0.96852	Diamond	I24

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.45	60.073	100	1	24.7	31.5		61265

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.45	1.47			0.861

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5LPG	1.45	60.073	61083	1996	99.732	0.168	0.1671	0.1973	20.958

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.357		-0.433	1.173		0.409

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.41
r_dihedral_angle_4_deg	14.044
r_dihedral_angle_3_deg	11.666
r_dihedral_angle_1_deg	7.422
r_lrange_it	6.389
r_lrange_other	6.154
r_scangle_it	4.592
r_scangle_other	4.591
r_scbond_it	2.926
r_scbond_other	2.925
r_mcangle_it	2.714
r_mcangle_other	2.714
r_mcbond_it	1.881
r_mcbond_other	1.881
r_angle_refined_deg	1.863
r_angle_other_deg	1.472
r_nbd_other	0.276
r_nbd_refined	0.246
r_symmetry_nbd_refined	0.244
r_xyhbond_nbd_other	0.215
r_xyhbond_nbd_refined	0.206
r_symmetry_nbd_other	0.189
r_symmetry_xyhbond_nbd_refined	0.186
r_nbtor_refined	0.175
r_symmetry_nbtor_other	0.094
r_chiral_restr	0.089
r_bond_refined_d	0.015
r_gen_planes_refined	0.012
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2510
Nucleic Acid Atoms
Solvent Atoms	404
Heterogen Atoms	70

Software

Software
Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing