7B66

Structure of NUDT15 R139H Mutant in complex with TH7755

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		294	0.1 M MMT pH 5.0, 25.4% PEG 1500

Crystal Properties
Matthews coefficient	Solvent content
2.21	44.25

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 41.276	α = 100.08
b = 60.215	β = 104.102
c = 69.303	γ = 90.25

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2019-11-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	MAX IV BEAMLINE BioMAX	0.97622	MAX IV	BioMAX

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.6	40.59	96.8	0.998	11.5	3.6		81339

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.6	1.63			0.976

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5LPG	1.6	40.59	81322	2415	96.797	0.186	0.1849	0.2201	30.762

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
5.219	-0.246	-0.763	-3.065	-1.316	-1.06

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.065
r_dihedral_angle_4_deg	15.753
r_dihedral_angle_3_deg	13.347
r_dihedral_angle_1_deg	7.201
r_lrange_it	6.939
r_lrange_other	6.928
r_scangle_it	5.393
r_scangle_other	5.393
r_mcangle_it	3.741
r_mcangle_other	3.74
r_scbond_it	3.606
r_scbond_other	3.605
r_mcbond_it	2.693
r_mcbond_other	2.687
r_angle_refined_deg	1.703
r_angle_other_deg	1.383
r_symmetry_nbd_refined	0.289
r_nbd_other	0.212
r_nbd_refined	0.209
r_symmetry_xyhbond_nbd_refined	0.2
r_symmetry_nbd_other	0.184
r_xyhbond_nbd_refined	0.172
r_nbtor_refined	0.17
r_symmetry_xyhbond_nbd_other	0.112
r_symmetry_nbtor_other	0.086
r_chiral_restr	0.085
r_bond_refined_d	0.013
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5046
Nucleic Acid Atoms
Solvent Atoms	265
Heterogen Atoms	128

Software

Software
Software Name	Purpose
REFMAC	refinement
PHENIX	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing