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Structure of the human mitochondrial HSPD1 single ring
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XCK experimental model PDB 4PJ1
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.814 f_angle_d 0.521 f_chiral_restr 0.042 f_plane_restr 0.004 f_bond_d 0.003
Sample human mitochondrial heat shock protein family member D1 (HSPD1)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details blot time 6 s
blot force 6
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 124784 Reported Resolution (Å) 3.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (1XCK, 4PJ1) Refinement Space REAL Refinement Protocol OTHER Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON III (4k x 4k) Electron Dose (electrons/Å**2) 38.5
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU MODEL FITTING UCSF Chimera MODEL FITTING Coot MODEL FITTING ISOLDE MODEL REFINEMENT PHENIX INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT RELION RECONSTRUCTION RELION
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION