7ATZ

G-quadruplex with V-shaped loop from the first repeat of KCNN4 minisatellite


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C HSQC aromatic0.9 mM No DNA90% H2O/10% D2O10 mM7.01 atm298Bruker AVANCE NEO 600
22D 1H-1H NOESY0.9 mM No DNA90% H2O/10% D2O10 mM7.01 atm298Bruker AVANCE NEO 600
32D 1H-13C HMBC0.9 mM No DNA90% H2O/10% D2O10 mM7.01 atm298Bruker AVANCE NEO 600
42D DQF-COSY0.9 mM No DNA100% D2O10 mM7.01 atm298Bruker AVANCE NEO 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
simulated annealingX-PLOR NIH
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number10
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentCcpNmr Analysis2.4.2CCPN
2processingTopSpin4.0.7Bruker Biospin
3data analysisCcpNmr Analysis2.4.2CCPN
4refinementX-PLOR NIH3.0.3Schwieters, Kuszewski, Tjandra and Clore
5refinementAmber16Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman