7ATY | pdb_00007aty

Solution NMR structure of the SH3 domain of human Caskin1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
23D HNCACB0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
33D CBCA(CO)NH0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
43D HBHA(CO)NH0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
53D CC-TOCSY-NNH0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
63D HCC-TOCSY0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
73D HCCH-TOCSY0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
82D 1H-13C HSQC aliphatic0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
92D 1H-13C HSQC aromatic0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
102D 1H-15N HSQC0.6 mM [U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
112D 1H-15N HSQC NH2 only0.6 mM [U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
123D 1H-15N NOESY0.6 mM [U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
133D 1H-13C NOESY aliphatic0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
143D 1H-13C NOESY aromatic0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
153D Met-Met NOESY0.6 mM [U-13C; U-15N] human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
162D 1H-1H NOESY1 mM human caskin1 SH3 domain90% H2O/10% D2O20 mM K-phosphate, 100 mM KCl, 0.05% NaN3, 0.1 mM TCEP7.21 atm283Varian Uniform NMR System 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianUniform NMR System600
NMR Refinement
MethodDetailsSoftware
simulated annealingtorsional angle simulated annealing followed by torsional angle and Cartesian molecular dynamics cooling stagesARIA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number30
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVnmrJVarian
2chemical shift assignmentFelixAccelrys Software Inc.
3peak pickingFelixAccelrys Software Inc.
4structure calculationARIALinge, O'Donoghue and Nilges
5refinementARIALinge, O'Donoghue and Nilges