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Structural evolution of the tissue-specific U2AF2 paralog and alternative splicing factor LS2
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT 90% H2O/10% D2O 0.07 mM 6.5 1 atm 298 Bruker AVANCE 800 800 2 2D 1H-13C HSQC aliphatic 0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT 90% H2O/10% D2O 0.07 mM 6.5 1 atm 298 Bruker AVANCE 800 800 3 2D 1H-13C HSQC aromatic 0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT 90% H2O/10% D2O 0.07 mM 6.5 1 atm 298 Bruker AVANCE 800 800 4 3D HNCACB 0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT 90% H2O/10% D2O 0.07 mM 6.5 1 atm 298 Bruker AVANCE 750 750 5 3D HNCA 0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT 90% H2O/10% D2O 0.07 mM 6.5 1 atm 298 Bruker AVANCE 750 750 8 3D 1H-15N NOESY 0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT 90% H2O/10% D2O 0.07 mM 6.5 1 atm 298 Bruker AVANCE 900 900 6 3D 1H-13C NOESY aliphatic 0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT 90% H2O/10% D2O 0.07 mM 6.5 1 atm 298 Bruker AVANCE 800 800 9 3D 1H-13C NOESY aromatic 0.5 mM 13C 15N LS2 RRM2, 0.02 mM 13C 15N potassium phosphate pH 6.5, 0.05 mM 13C 15N sodium chloride, 0.002 mM 13C 15N DTT 90% H2O/10% D2O 0.07 mM 6.5 1 atm 298 Bruker AVANCE 800 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 750 750 2 Bruker AVANCE 800 800 3 Bruker AVANCE 900 900
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 40 Conformers Submitted Total Number 10 Representative Model 1 (medoid)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger A. T. et.al. 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard