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Crystal structure of the CRINKLY WD40 ectodomain from the Arabidopsis thaliana receptor kinase ACR4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 16 % PEG 6,000, 0.01 M tri-sodium citrate pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.17 43.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.991 α = 90 b = 87.952 β = 90.097 c = 88.618 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2016-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.991870 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 48.05 99.7 0.119 0.125 1 8.75 6.8 83857 -3 40.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.07 98.3 2.08 1.94 0.39 0.91 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD FREE R-VALUE 1.95 48.05 83803 4029 99.856 0.221 0.22 0.2233 0.2391 0.2407 48.462
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.201 0.754 1.64 -0.441
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.388 r_dihedral_angle_other_3_deg 18.168 r_dihedral_angle_1_deg 12.834 r_dihedral_angle_4_deg 12.076 r_dihedral_angle_3_deg 11.841 r_lrange_it 3.843 r_lrange_other 3.756 r_angle_refined_deg 1.187 r_angle_other_deg 1.102 r_scangle_it 0.707
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.388 r_dihedral_angle_other_3_deg 18.168 r_dihedral_angle_1_deg 12.834 r_dihedral_angle_4_deg 12.076 r_dihedral_angle_3_deg 11.841 r_lrange_it 3.843 r_lrange_other 3.756 r_angle_refined_deg 1.187 r_angle_other_deg 1.102 r_scangle_it 0.707 r_scangle_other 0.707 r_mcangle_it 0.6 r_mcangle_other 0.6 r_scbond_it 0.393 r_scbond_other 0.393 r_mcbond_it 0.329 r_mcbond_other 0.329 r_nbtor_refined 0.156 r_symmetry_nbd_other 0.154 r_nbd_refined 0.148 r_nbd_other 0.118 r_xyhbond_nbd_refined 0.103 r_symmetry_xyhbond_nbd_refined 0.089 r_symmetry_nbd_refined 0.082 r_symmetry_nbtor_other 0.07 r_chiral_restr 0.033 r_bond_refined_d 0.002 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7918 Nucleic Acid Atoms Solvent Atoms 270 Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling autoSHARP phasing