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Structure-based exploration of selectivity for ATM inhibitors in Huntingtons disease
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6I3U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 1.4 M sodium malonate pH 7.0, 0.1 M BIS-TRIS
Crystal Properties Matthews coefficient Solvent content 2.85 56.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.864 α = 90 b = 168.115 β = 90 c = 61.692 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2016-03-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.966 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.12 49.73 99.8 0.999 9 3 15383
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.12 3.34 0.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6I3U 3.12 49.73 15383 815 99.676 0.217 0.2147 0.2609 0.2284 56.468
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.539 -1.223 -6.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.429 r_dihedral_angle_3_deg 16.788 r_dihedral_angle_4_deg 15.403 r_lrange_it 6.572 r_lrange_other 6.572 r_dihedral_angle_1_deg 6.447 r_mcangle_it 4.138 r_mcangle_other 4.138 r_scangle_it 4.111 r_scangle_other 4.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.429 r_dihedral_angle_3_deg 16.788 r_dihedral_angle_4_deg 15.403 r_lrange_it 6.572 r_lrange_other 6.572 r_dihedral_angle_1_deg 6.447 r_mcangle_it 4.138 r_mcangle_other 4.138 r_scangle_it 4.111 r_scangle_other 4.111 r_mcbond_it 2.398 r_mcbond_other 2.394 r_scbond_it 2.315 r_scbond_other 2.314 r_angle_other_deg 2.288 r_angle_refined_deg 1.851 r_symmetry_xyhbond_nbd_refined 0.294 r_symmetry_nbd_other 0.181 r_nbd_refined 0.178 r_nbtor_refined 0.161 r_nbd_other 0.161 r_chiral_restr 0.123 r_symmetry_nbd_refined 0.106 r_xyhbond_nbd_refined 0.096 r_symmetry_nbtor_other 0.068 r_bond_other_d 0.035 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4442 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing