6Y0R | pdb_00006y0r

Chitooligosaccharide oxidase

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1ZR6

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	0.3 M Calcium Chloride, 0.1 M Bis-Tris pH 5.7, 34% w/v PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
2.52	51.25

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 73.686	α = 90
b = 74.247	β = 90
c = 97.157	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2017-04-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.00980	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.611	48.626	96.84	1	20.59	2		67366

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.611	1.668			0.698

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1zr6	1.611	48.626	67366	3243	96.846	0.174	0.1728	0.18	0.1976	0.21	22.589

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.009			-0.006		-0.003

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_other_3_deg	36.286
r_dihedral_angle_2_deg	32.724
r_dihedral_angle_3_deg	13.171
r_dihedral_angle_4_deg	9.686
r_dihedral_angle_1_deg	6.732
r_lrange_it	6.091
r_lrange_other	5.976
r_scangle_it	4.824
r_scangle_other	4.823
r_scbond_other	3.289
r_scbond_it	3.286
r_angle_other_deg	2.62
r_mcangle_it	2.596
r_mcangle_other	2.596
r_mcbond_it	1.834
r_mcbond_other	1.825
r_angle_refined_deg	1.778
r_xyhbond_nbd_other	0.731
r_symmetry_xyhbond_nbd_refined	0.66
r_symmetry_nbd_refined	0.462
r_nbd_other	0.342
r_symmetry_xyhbond_nbd_other	0.27
r_nbd_refined	0.243
r_symmetry_nbd_other	0.228
r_xyhbond_nbd_refined	0.222
r_nbtor_refined	0.177
r_symmetry_nbtor_other	0.088
r_chiral_restr	0.087
r_bond_other_d	0.036
r_gen_planes_other	0.031
r_bond_refined_d	0.014
r_gen_planes_refined	0.012

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3527
Nucleic Acid Atoms
Solvent Atoms	353
Heterogen Atoms	53

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing