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Chitooligosaccharide oxidase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZR6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 0.3 M Calcium Chloride, 0.1 M Bis-Tris pH 5.7, 34% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.52 51.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.686 α = 90 b = 74.247 β = 90 c = 97.157 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00980 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.611 48.626 96.84 1 20.59 2 67366
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.611 1.668 0.698
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1zr6 1.611 48.626 67366 3243 96.846 0.174 0.1728 0.1728 0.1976 0.1975 22.589
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.009 -0.006 -0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_3_deg 36.286 r_dihedral_angle_2_deg 32.724 r_dihedral_angle_3_deg 13.171 r_dihedral_angle_4_deg 9.686 r_dihedral_angle_1_deg 6.732 r_lrange_it 6.091 r_lrange_other 5.976 r_scangle_it 4.824 r_scangle_other 4.823 r_scbond_other 3.289
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_3_deg 36.286 r_dihedral_angle_2_deg 32.724 r_dihedral_angle_3_deg 13.171 r_dihedral_angle_4_deg 9.686 r_dihedral_angle_1_deg 6.732 r_lrange_it 6.091 r_lrange_other 5.976 r_scangle_it 4.824 r_scangle_other 4.823 r_scbond_other 3.289 r_scbond_it 3.286 r_angle_other_deg 2.62 r_mcangle_it 2.596 r_mcangle_other 2.596 r_mcbond_it 1.834 r_mcbond_other 1.825 r_angle_refined_deg 1.778 r_xyhbond_nbd_other 0.731 r_symmetry_xyhbond_nbd_refined 0.66 r_symmetry_nbd_refined 0.462 r_nbd_other 0.342 r_symmetry_xyhbond_nbd_other 0.27 r_nbd_refined 0.243 r_symmetry_nbd_other 0.228 r_xyhbond_nbd_refined 0.222 r_nbtor_refined 0.177 r_symmetry_nbtor_other 0.088 r_chiral_restr 0.087 r_bond_other_d 0.036 r_gen_planes_other 0.031 r_bond_refined_d 0.014 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3527 Nucleic Acid Atoms Solvent Atoms 353 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing