6XAB

Structure of the acetate-bound form of ArrX from Chrysiogenes arsenatis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2930.2 M ammonium acetate, 0.1 M Tris pH 7.5, 20% (w/v) PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.3247

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.663α = 90
b = 52.927β = 108.361
c = 54.967γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2019-03-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX20.953Australian SynchrotronMX2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7840.6796.70.9924.42.823640
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.781.820.374

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6X6B1.78140.6722438116496.3820.1910.1890.221628.407
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.2551.149-1.654-0.298
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.513
r_dihedral_angle_4_deg13.549
r_dihedral_angle_3_deg12.94
r_dihedral_angle_1_deg6.076
r_lrange_it5.897
r_lrange_other5.896
r_scangle_it3.588
r_scangle_other3.586
r_mcangle_it2.307
r_mcangle_other2.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.513
r_dihedral_angle_4_deg13.549
r_dihedral_angle_3_deg12.94
r_dihedral_angle_1_deg6.076
r_lrange_it5.897
r_lrange_other5.896
r_scangle_it3.588
r_scangle_other3.586
r_mcangle_it2.307
r_mcangle_other2.307
r_scbond_it2.25
r_scbond_other2.249
r_mcbond_it1.534
r_mcbond_other1.522
r_angle_refined_deg1.316
r_angle_other_deg1.237
r_nbd_refined0.194
r_symmetry_nbd_refined0.18
r_symmetry_xyhbond_nbd_refined0.179
r_symmetry_nbd_other0.176
r_xyhbond_nbd_refined0.164
r_nbtor_refined0.161
r_nbd_other0.151
r_symmetry_xyhbond_nbd_other0.094
r_symmetry_nbtor_other0.078
r_chiral_restr0.06
r_gen_planes_refined0.006
r_bond_refined_d0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2019
Nucleic Acid Atoms
Solvent Atoms115
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing