Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Data at spatial frequencies higher than 1/4.8 A-1 were not used during any part of the refinement.
Refinement Type
Symmetry Type
POINT
Point Symmetry
C4
Map-Model Fitting and Refinement
Id
1 (3J9P)
Refinement Space
REAL
Refinement Protocol
AB INITIO MODEL
Refinement Target
Overall B Value
Fitting Procedure
Details
CCG MOE was used for refinement after Phenix real-space refinement.
Data Acquisition
Detector Type
GATAN K2 QUANTUM (4k x 4k)
Electron Dose (electrons/Å**2)
47.5
Imaging Experiment
1
Date of Experiment
Temperature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
130000
Calibrated Magnification
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
EM Software
Task
Software Package
Version
IMAGE ACQUISITION
SerialEM
CTF CORRECTION
cisTEM
MODEL FITTING
Coot
MODEL FITTING
ISOLDE
INITIAL EULER ASSIGNMENT
cisTEM
FINAL EULER ASSIGNMENT
cisTEM
CLASSIFICATION
cisTEM
RECONSTRUCTION
cisTEM
MODEL REFINEMENT
PHENIX
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
4114800
15,630 movies were selected because of the quality of their CTF fits. 4,114,800 coordinates were selected, leading to 466,632 particles which clustered into high-quality 2D class averages