X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP292.15100 mM HEPES pH 7.0, 30% Jeffamine ED-2003
Crystal Properties
Matthews coefficientSolvent content
2.5451.48

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.78α = 90
b = 66.22β = 100.53
c = 124.53γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2017-10-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-ID1.0APS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.46122.43291.10.99913.751961062.12
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.462.7658.20.6053.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6P8I2.4635.911860499666.050.243560.240170.30778RANDOM76.091
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.413.71-2.432.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.564
r_dihedral_angle_3_deg17.151
r_dihedral_angle_4_deg15.844
r_dihedral_angle_1_deg7.664
r_long_range_B_refined4.133
r_long_range_B_other4.114
r_mcangle_it2.145
r_mcangle_other2.145
r_scangle_other1.558
r_angle_refined_deg1.215
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.564
r_dihedral_angle_3_deg17.151
r_dihedral_angle_4_deg15.844
r_dihedral_angle_1_deg7.664
r_long_range_B_refined4.133
r_long_range_B_other4.114
r_mcangle_it2.145
r_mcangle_other2.145
r_scangle_other1.558
r_angle_refined_deg1.215
r_mcbond_it1.168
r_mcbond_other1.168
r_angle_other_deg0.949
r_scbond_it0.836
r_scbond_other0.836
r_chiral_restr0.067
r_bond_refined_d0.006
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4482
Nucleic Acid Atoms
Solvent Atoms74
Heterogen Atoms14

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
autoPROCdata scaling
Cootmodel building
PHASERphasing