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N-terminal 5 domains of CI-MPR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6P8I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 292.15 100 mM HEPES pH 7.0, 30% Jeffamine ED-2003
Crystal Properties Matthews coefficient Solvent content 2.54 51.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.78 α = 90 b = 66.22 β = 100.53 c = 124.53 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.46 122.432 91.1 0.999 13.7 5 19610 62.12
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.46 2.76 58.2 0.605 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6P8I 2.46 35.91 18604 996 66.05 0.24356 0.24017 0.2477 0.30778 0.3124 RANDOM 76.091
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.41 3.71 -2.43 2.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.564 r_dihedral_angle_3_deg 17.151 r_dihedral_angle_4_deg 15.844 r_dihedral_angle_1_deg 7.664 r_long_range_B_refined 4.133 r_long_range_B_other 4.114 r_mcangle_it 2.145 r_mcangle_other 2.145 r_scangle_other 1.558 r_angle_refined_deg 1.215
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.564 r_dihedral_angle_3_deg 17.151 r_dihedral_angle_4_deg 15.844 r_dihedral_angle_1_deg 7.664 r_long_range_B_refined 4.133 r_long_range_B_other 4.114 r_mcangle_it 2.145 r_mcangle_other 2.145 r_scangle_other 1.558 r_angle_refined_deg 1.215 r_mcbond_it 1.168 r_mcbond_other 1.168 r_angle_other_deg 0.949 r_scbond_it 0.836 r_scbond_other 0.836 r_chiral_restr 0.067 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4482 Nucleic Acid Atoms Solvent Atoms 74 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction autoPROC data scaling Coot model building PHASER phasing