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Complement factor B in complex with 5-Bromo-3-chloro-N-(4,5-dihydro-1H-imidazol-2-yl)-7-methyl-1H-indol-4-amine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DLE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 2.4M AMMONIUM SULPHATE, 0.1 M SODIUM ACETATE PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.78 55.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.926 α = 90 b = 91.926 β = 90 c = 260.415 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2010-08-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.84 91.91 100 0.146 0.152 20.75 13 27309
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.84 2.93 100 0.5 0.52 7.39
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1DLE 2.84 86.684 27308 1366 99.985 0.2 0.1976 0.1977 0.2389 0.2389 25.84
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.018 0.018 -0.036
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.151 r_dihedral_angle_4_deg 21.797 r_dihedral_angle_3_deg 20.423 r_lrange_it 8.94 r_dihedral_angle_1_deg 6.646 r_scangle_it 6.124 r_mcangle_it 4.768 r_scbond_it 3.93 r_mcbond_it 2.863 r_angle_refined_deg 1.714
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.151 r_dihedral_angle_4_deg 21.797 r_dihedral_angle_3_deg 20.423 r_lrange_it 8.94 r_dihedral_angle_1_deg 6.646 r_scangle_it 6.124 r_mcangle_it 4.768 r_scbond_it 3.93 r_mcbond_it 2.863 r_angle_refined_deg 1.714 r_nbtor_refined 0.32 r_nbd_refined 0.219 r_symmetry_xyhbond_nbd_refined 0.214 r_symmetry_nbd_refined 0.177 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.127 r_ncsr_local_group_1 0.089 r_ncsr_local_group_2 0.089 r_ncsr_local_group_3 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6284 Nucleic Acid Atoms Solvent Atoms 45 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing