6T8U

Complement factor B in complex with 5-Bromo-3-chloro-N-(4,5-dihydro-1H-imidazol-2-yl)-7-methyl-1H-indol-4-amine


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2982.4M AMMONIUM SULPHATE, 0.1 M SODIUM ACETATE PH 4.6
Crystal Properties
Matthews coefficientSolvent content
2.7855.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.926α = 90
b = 91.926β = 90
c = 260.415γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2010-08-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.000SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8491.911000.1460.15220.751327309
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.842.931000.50.527.39

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1DLE2.8486.68427308136699.9850.20.19760.238925.84
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0180.018-0.036
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.151
r_dihedral_angle_4_deg21.797
r_dihedral_angle_3_deg20.423
r_lrange_it8.94
r_dihedral_angle_1_deg6.646
r_scangle_it6.124
r_mcangle_it4.768
r_scbond_it3.93
r_mcbond_it2.863
r_angle_refined_deg1.714
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.151
r_dihedral_angle_4_deg21.797
r_dihedral_angle_3_deg20.423
r_lrange_it8.94
r_dihedral_angle_1_deg6.646
r_scangle_it6.124
r_mcangle_it4.768
r_scbond_it3.93
r_mcbond_it2.863
r_angle_refined_deg1.714
r_nbtor_refined0.32
r_nbd_refined0.219
r_symmetry_xyhbond_nbd_refined0.214
r_symmetry_nbd_refined0.177
r_xyhbond_nbd_refined0.133
r_chiral_restr0.127
r_ncsr_local_group_10.089
r_ncsr_local_group_20.089
r_ncsr_local_group_30.085
r_bond_refined_d0.009
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6284
Nucleic Acid Atoms
Solvent Atoms45
Heterogen Atoms94

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing