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Bovine lactoglobulin complex with decanol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BSY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.34 M sodium citrate in 0.1 M Tris-HCl pH 7.5, decanol
Crystal Properties Matthews coefficient Solvent content 2.48 50.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.145 α = 90 b = 53.145 β = 90 c = 111.41 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD AGILENT ATLAS CCD 2010-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE Agilent SuperNova 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 13.29 99.2 0.032 0.999 10.6 2.5 13734
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 0.33 0.871 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BSY 1.95 13.286 13638 1357 98.334 0.179 0.17921 0.1738 0.1831 0.2285 0.2337 RANDOM 32.474
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.025 0.013 0.025 -0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.862 r_dihedral_angle_3_deg 14.801 r_lrange_it 12.14 r_lrange_other 12.135 r_scangle_it 11.674 r_scangle_other 11.668 r_scbond_it 9.938 r_scbond_other 9.93 r_dihedral_angle_4_deg 9.306 r_dihedral_angle_1_deg 7.432
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.862 r_dihedral_angle_3_deg 14.801 r_lrange_it 12.14 r_lrange_other 12.135 r_scangle_it 11.674 r_scangle_other 11.668 r_scbond_it 9.938 r_scbond_other 9.93 r_dihedral_angle_4_deg 9.306 r_dihedral_angle_1_deg 7.432 r_mcangle_it 7.267 r_mcangle_other 7.262 r_mcbond_other 6.288 r_mcbond_it 6.284 r_angle_refined_deg 1.582 r_angle_other_deg 1.292 r_nbd_refined 0.192 r_nbd_other 0.188 r_symmetry_nbd_other 0.186 r_xyhbond_nbd_refined 0.176 r_nbtor_refined 0.154 r_symmetry_xyhbond_nbd_refined 0.146 r_symmetry_nbd_refined 0.101 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.078 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1178 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling PHASER phasing