6SGL

Crystal structure of monooxygenase RutA complexed with Uracil under atmospheric pressure.

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		295	100 mM Bis-Tris pH 6.5, 1900 mM ammonium sulphate, 2-5% MPD (v/v),1 mM FMN

Crystal Properties
Matthews coefficient	Solvent content
2.7	54.41

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 87.914	α = 90
b = 87.914	β = 90
c = 97.01	γ = 120

Symmetry
Space Group	P 31 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2019-06-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	1.0	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.01	48.51	98.4	0.99	15.3	5		28857

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.01	2.12			0.63

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	5WAN	2.01	43.996	28828	1369	98.292	0.202	0.1999	0.247	48.663

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.239	0.12		0.239		-0.776

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.85
r_dihedral_angle_3_deg	16.618
r_dihedral_angle_4_deg	15.349
r_lrange_it	9.222
r_scangle_it	7.759
r_dihedral_angle_1_deg	7.16
r_scbond_it	5.578
r_mcangle_it	5.352
r_mcbond_it	4.155
r_angle_refined_deg	1.672

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.85
r_dihedral_angle_3_deg	16.618
r_dihedral_angle_4_deg	15.349
r_lrange_it	9.222
r_scangle_it	7.759
r_dihedral_angle_1_deg	7.16
r_scbond_it	5.578
r_mcangle_it	5.352
r_mcbond_it	4.155
r_angle_refined_deg	1.672
r_nbtor_refined	0.318
r_nbd_refined	0.223
r_symmetry_nbd_refined	0.183
r_chiral_restr	0.121
r_xyhbond_nbd_refined	0.117
r_symmetry_xyhbond_nbd_refined	0.107
r_gen_planes_refined	0.009
r_bond_refined_d	0.008

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2618
Nucleic Acid Atoms
Solvent Atoms	78
Heterogen Atoms	44

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
SCALA	data scaling
PHASER	phasing

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.