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An AA10 LPMO from the shipworm symbiont Teredinibacter turnerae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 292 0.2 M magnesium formate dehydrate pH 7.0 and 20 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.08 40.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.644 α = 90 b = 62.516 β = 99.13 c = 43.185 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 36.18 99.5 0.072 0.083 0.041 0.998 12.3 3.9 147995 37737
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 95.6 0.796 0.972 0.548 0.606 1.3 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 35.25 35875 1841 99.44 0.1537 0.1525 0.1596 0.1751 0.1772 RANDOM 12.773
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 -0.27 0.12 0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.897 r_dihedral_angle_3_deg 12.105 r_dihedral_angle_4_deg 7.853 r_dihedral_angle_1_deg 7.349 r_angle_other_deg 2.443 r_angle_refined_deg 1.565 r_mcangle_it 1.292 r_mcbond_it 0.841 r_mcbond_other 0.829 r_chiral_restr 0.081
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.897 r_dihedral_angle_3_deg 12.105 r_dihedral_angle_4_deg 7.853 r_dihedral_angle_1_deg 7.349 r_angle_other_deg 2.443 r_angle_refined_deg 1.565 r_mcangle_it 1.292 r_mcbond_it 0.841 r_mcbond_other 0.829 r_chiral_restr 0.081 r_bond_other_d 0.037 r_gen_planes_other 0.014 r_gen_planes_refined 0.01 r_bond_refined_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1657 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction xia2 data reduction Aimless data scaling CRANK2 phasing