6RS3

2'-F-riboguanosine modified G-quadruplex with V-loop


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY1.0 mM F141590% H2O/10% D2O15 mM71 atm313Bruker AVANCE III 600
22D 1H-1H NOESY1.0 mM F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
32D 1H-13C HSQC aromatic1.0 mM F141590% H2O/10% D2O15 mM71 atm313Bruker AVANCE III 600
42D 1H-13C HSQC aromatic1.0 mM F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
52D DQF-COSY1.0 mM F1415100% D2O15 mM71 atm313Bruker AVANCE III 600
62D 1H-13C HMBC1.0 mM F141590% H2O/10% D2O15 mM71 atm313Bruker AVANCE III 600
72D 1H-13C HMBC1.0 mM F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
82D 1H-1H NOESY1.0 mM F1415100% D2O15 mM71 atm313Bruker AVANCE III 600
91D 1H-15N HMBC0.2 mM 15N 10% G1 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
101D 1H-15N HMBC0.2 mM 15N 10% G2 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
111D 1H-15N HMBC0.2 mM 15N 10% G3 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
121D 1H-15N HMBC0.2 mM 15N 10% G6 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
131D 1H-15N HMBC0.2 mM 15N 10% G17 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
141D 1H-15N HMBC0.2 mM 15N 10% G8 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
151D 1H-15N HMBC0.2 mM 15N 10% G16 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
161D 1H-15N HMBC0.2 mM 15N 10% G17 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
171D 1H-15N HMBC0.2 mM 15N 10% G20 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
181D 1H-15N HMBC0.2 mM 15N 10% G21 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
191D 1H-15N HMBC0.2 mM 15N 10% A9 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
201D 1H-15N HMBC0.2 mM 15N 10% A9 F141590% H2O/10% D2O15 mM71 atm313Bruker AVANCE III 600
211D 1H-15N HMBC0.2 mM 15N 10% A11 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
221D 1H-15N HMBC0.2 mM 15N 10% A11 F141590% H2O/10% D2O15 mM71 atm313Bruker AVANCE III 600
231D 1H-15N HMBC0.2 mM 15N 10% A13 F141590% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
241D 1H-15N HMBC0.2 mM 15N 10% A13 F141590% H2O/10% D2O15 mM71 atm313Bruker AVANCE III 600
252D 1H-13C HSQC aromatic0.4 mM F1415(10MeC)90% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
262D 1H-13C HSQC aromatic0.4 mM F1415(10MeC)90% H2O/10% D2O15 mM71 atm313Bruker AVANCE III 600
272D 1H-13C HSQC aromatic0.4 mM F1415(12MeC)90% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
282D 1H-13C HSQC aromatic0.4 mM F1415(12MeC)90% H2O/10% D2O15 mM71 atm313Bruker AVANCE III 600
292D DQF-COSY0.4 mM F1415(10MeC)90% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
302D DQF-COSY0.4 mM F1415(10MeC)90% H2O/10% D2O15 mM71 atm313Bruker AVANCE III 600
312D DQF-COSY0.4 mM F1415(12MeC)90% H2O/10% D2O15 mM71 atm298Bruker AVANCE III 600
322D DQF-COSY0.4 mM F1415(12MeC)90% H2O/10% D2O15 mM71 atm313Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
simulated annealingXplor-NIH
molecular dynamicsAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number20
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingTopSpin4.0.4Bruker Biospin
2chemical shift assignmentCcpNmr Analysis2.4.2CCPN
3structure calculationXplor-NIH2.49Schwieters, Kuszewski, Tjandra and Clore
4structure calculationAmber16Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman