6RS3 | pdb_00006rs3

2'-F-riboguanosine modified G-quadruplex with V-loop

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	1.0 mM F1415	90% H2O/10% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
2	2D 1H-1H NOESY	1.0 mM F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
3	2D 1H-13C HSQC aromatic	1.0 mM F1415	90% H2O/10% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
4	2D 1H-13C HSQC aromatic	1.0 mM F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
5	2D DQF-COSY	1.0 mM F1415	100% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
6	2D 1H-13C HMBC	1.0 mM F1415	90% H2O/10% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
7	2D 1H-13C HMBC	1.0 mM F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
8	2D 1H-1H NOESY	1.0 mM F1415	100% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
9	1D 1H-15N HMBC	0.2 mM 15N 10% G1 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
10	1D 1H-15N HMBC	0.2 mM 15N 10% G2 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
11	1D 1H-15N HMBC	0.2 mM 15N 10% G3 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
12	1D 1H-15N HMBC	0.2 mM 15N 10% G6 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
13	1D 1H-15N HMBC	0.2 mM 15N 10% G17 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
14	1D 1H-15N HMBC	0.2 mM 15N 10% G8 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
15	1D 1H-15N HMBC	0.2 mM 15N 10% G16 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
16	1D 1H-15N HMBC	0.2 mM 15N 10% G17 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
17	1D 1H-15N HMBC	0.2 mM 15N 10% G20 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
18	1D 1H-15N HMBC	0.2 mM 15N 10% G21 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
19	1D 1H-15N HMBC	0.2 mM 15N 10% A9 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
20	1D 1H-15N HMBC	0.2 mM 15N 10% A9 F1415	90% H2O/10% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
21	1D 1H-15N HMBC	0.2 mM 15N 10% A11 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
22	1D 1H-15N HMBC	0.2 mM 15N 10% A11 F1415	90% H2O/10% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
23	1D 1H-15N HMBC	0.2 mM 15N 10% A13 F1415	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
24	1D 1H-15N HMBC	0.2 mM 15N 10% A13 F1415	90% H2O/10% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
25	2D 1H-13C HSQC aromatic	0.4 mM F1415(10MeC)	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
26	2D 1H-13C HSQC aromatic	0.4 mM F1415(10MeC)	90% H2O/10% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
27	2D 1H-13C HSQC aromatic	0.4 mM F1415(12MeC)	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
28	2D 1H-13C HSQC aromatic	0.4 mM F1415(12MeC)	90% H2O/10% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
29	2D DQF-COSY	0.4 mM F1415(10MeC)	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
30	2D DQF-COSY	0.4 mM F1415(10MeC)	90% H2O/10% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600
31	2D DQF-COSY	0.4 mM F1415(12MeC)	90% H2O/10% D2O	15 mM	7	1 atm	298	Bruker AVANCE III 600
32	2D DQF-COSY	0.4 mM F1415(12MeC)	90% H2O/10% D2O	15 mM	7	1 atm	313	Bruker AVANCE III 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600

NMR Refinement
Method	Details	Software
simulated annealing		Xplor-NIH
molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	20
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	processing	TopSpin	4.0.4	Bruker Biospin
2	chemical shift assignment	CcpNmr Analysis	2.4.2	CCPN
3	structure calculation	Xplor-NIH	2.49	Schwieters, Kuszewski, Tjandra and Clore
4	structure calculation	Amber	16	Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman