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HEWL lysozyme, crystallized from CuCl2 solution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WLD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 CuCl2
Crystal Properties Matthews coefficient Solvent content 1.99 38.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.739 α = 90 b = 78.739 β = 90 c = 36.774 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2018-05-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON KURCHATOV SNC BEAMLINE K4.4 0.80241 KURCHATOV SNC K4.4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 27.84 99.24 0.079 15.5 7.3 25990
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.385
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4WLD 1.35 27.84 24459 1338 99.24 0.16128 0.15975 0.1625 0.18962 0.1932 RANDOM 13.834
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.117 r_sphericity_free 18.897 r_dihedral_angle_4_deg 15.638 r_dihedral_angle_3_deg 12.587 r_sphericity_bonded 7.821 r_dihedral_angle_1_deg 6.254 r_rigid_bond_restr 4.519 r_long_range_B_refined 2.669 r_long_range_B_other 2.476 r_scangle_other 2.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.117 r_sphericity_free 18.897 r_dihedral_angle_4_deg 15.638 r_dihedral_angle_3_deg 12.587 r_sphericity_bonded 7.821 r_dihedral_angle_1_deg 6.254 r_rigid_bond_restr 4.519 r_long_range_B_refined 2.669 r_long_range_B_other 2.476 r_scangle_other 2.001 r_scbond_it 1.757 r_scbond_other 1.755 r_mcangle_other 1.649 r_mcangle_it 1.648 r_angle_refined_deg 1.463 r_mcbond_it 1.297 r_mcbond_other 1.278 r_angle_other_deg 1.063 r_chiral_restr 0.1 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1000 Nucleic Acid Atoms Solvent Atoms 141 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing