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PCNA complex with Cdt2 C-terminal PIP-box peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 10% (w/v) PEG 6000
100 mM MES/HCl
Crystal Properties Matthews coefficient Solvent content 3.38 63.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.369 α = 90 b = 151.369 β = 90 c = 91.489 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-04-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.872600 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 45.7 97.1 7.1 8 14850
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.5 43.73 14082 748 97.22 0.19836 0.1956 0.2029 0.25164 0.2569 RANDOM 68.691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 -0.42 -0.83 2.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.697 r_dihedral_angle_4_deg 24.355 r_dihedral_angle_3_deg 21.156 r_dihedral_angle_1_deg 9.357 r_long_range_B_refined 6.029 r_long_range_B_other 6.028 r_mcangle_it 3.615 r_mcangle_other 3.615 r_scangle_other 3.181 r_mcbond_it 2.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.697 r_dihedral_angle_4_deg 24.355 r_dihedral_angle_3_deg 21.156 r_dihedral_angle_1_deg 9.357 r_long_range_B_refined 6.029 r_long_range_B_other 6.028 r_mcangle_it 3.615 r_mcangle_other 3.615 r_scangle_other 3.181 r_mcbond_it 2.069 r_mcbond_other 2.069 r_angle_refined_deg 1.806 r_scbond_it 1.762 r_scbond_other 1.762 r_angle_other_deg 1.272 r_chiral_restr 0.233 r_bond_refined_d 0.009 r_bond_other_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6173 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing