6QC0

PCNA complex with Cdt2 C-terminal PIP-box peptide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP629310% (w/v) PEG 6000 100 mM MES/HCl
Crystal Properties
Matthew coefficientSolvent content
3.3863.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 151.369α = 90
b = 151.369β = 90
c = 91.489γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2016-04-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.872600ESRFID29

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.545.797.17.1814850
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.53.83

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.543.731408274897.220.198360.19560.25164RANDOM68.691
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.83-0.42-0.832.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.697
r_dihedral_angle_4_deg24.355
r_dihedral_angle_3_deg21.156
r_dihedral_angle_1_deg9.357
r_long_range_B_refined6.029
r_long_range_B_other6.028
r_mcangle_other3.615
r_mcangle_it3.615
r_scangle_other3.181
r_mcbond_it2.069
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.697
r_dihedral_angle_4_deg24.355
r_dihedral_angle_3_deg21.156
r_dihedral_angle_1_deg9.357
r_long_range_B_refined6.029
r_long_range_B_other6.028
r_mcangle_other3.615
r_mcangle_it3.615
r_scangle_other3.181
r_mcbond_it2.069
r_mcbond_other2.069
r_angle_refined_deg1.806
r_scbond_it1.762
r_scbond_other1.762
r_angle_other_deg1.272
r_chiral_restr0.233
r_bond_refined_d0.009
r_gen_planes_refined0.007
r_bond_other_d0.007
r_gen_planes_other0.005
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_scangle_it
r_metal_ion_refined
r_metal_ion_other
r_sphericity_bonded
r_rigid_bond_restr
r_sphericity_free
r_symmetry_vdw_refined
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6173
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing