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HEW Lysozyme under 2 kbar of argon
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FST
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.8 298 10 % (W/V) NACL, 0.1 M ACETATE BUFFER PH 4.8. + 25 % (V/V) ETH-GLYCOL
Crystal Properties Matthews coefficient Solvent content 2.09 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.83 α = 90 b = 77.83 β = 90 c = 37.99 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 1.7712 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 40 94.4 0.083 0.999 19.03 18 12830
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.78 58.3 0.472 0.887 2.4 8.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5FST 1.7 38.95 12102 618 95.3 0.15445 0.15269 0.1651 0.18798 0.1953 RANDOM 14.007
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.944 r_dihedral_angle_4_deg 22.757 r_dihedral_angle_3_deg 14.358 r_dihedral_angle_1_deg 7.545 r_long_range_B_refined 6.14 r_long_range_B_other 5.873 r_scangle_other 3.339 r_scbond_it 2.186 r_scbond_other 2.186 r_mcangle_other 1.809
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.944 r_dihedral_angle_4_deg 22.757 r_dihedral_angle_3_deg 14.358 r_dihedral_angle_1_deg 7.545 r_long_range_B_refined 6.14 r_long_range_B_other 5.873 r_scangle_other 3.339 r_scbond_it 2.186 r_scbond_other 2.186 r_mcangle_other 1.809 r_mcangle_it 1.8 r_angle_refined_deg 1.69 r_angle_other_deg 1.532 r_mcbond_it 1.228 r_mcbond_other 1.196 r_chiral_restr 0.092 r_gen_planes_refined 0.012 r_bond_refined_d 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling FFT phasing