6PTS

NMR data-driven model of KRas-GMPPNP:RBD-CRD complex tethered to a nanodisc (state A)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C HMQC0.2 mM U-2H; U-15N; Ile Leu C-delta-13C, Val C-gamma-13C KRAS, 0.2 mM U-12C, 14N, 1H RBD-CRD, 0.4 mM U-12C, 14N, 1H MSP90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
22D 1H-13C HMQC0.2 mM U-12C, 14N, 1H KRAS, 0.2 mM U-2H; U-15N; Ile Leu C-delta-13C, Val C-gamma-13C RBD-CRD, 0.4 mM U-12C, 14N, 1H MSP90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
32D 1H-15N TROSY0.2 mM U-12C, 14N, 1H KRAS, 0.2 mM U-2H; U-15N; Ile Leu C-delta-13C, Val C-gamma-13C RBD-CRD, 0.4 mM U-12C, 14N, 1H MSP90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
42D 1H-13C HMQC0.2 mM U-12C, 14N, 1H KRAS, 0.2 mM U-2H; U-15N; Ile Leu C-delta-13C, Val C-gamma-13C RBD-CRD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
52D 1H-15N TROSY0.2 mM U-12C, 14N, 1H KRAS, 0.2 mM U-2H; U-15N; Ile Leu C-delta-13C, Val C-gamma-13C RBD-CRD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
62D 1H-13C HMQC0.2 mM U-12C, 14N, 1H KRAS, 0.2 mM U-2H; U-15N; Ile Leu C-delta-13C, Val C-gamma-13C RBD-CRD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
72D 1H-15N TROSY0.2 mM U-12C, 14N, 1H KRAS, 0.2 mM U-2H; U-15N; Ile Leu C-delta-13C, Val C-gamma-13C RBD-CRD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
83D 5N edited NOESY0.5 mM U-15N; Ile C-delta-13C, Met methyl-13C KRAS, 0.5 mM Leu C-delta-13C, Val C-gamma-13C, RBD-CRD90% H2O/10% D2O150 mM5.51 atm308Bruker AVANCE III 700
93D HNCACB0.5 mM [U-99% 15N]; [U-13C]; RBD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
103D CBCA(CO)NH0.5 mM [U-99% 15N]; [U-13C]; RBD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
113D HNCA0.5 mM [U-99% 15N]; [U-13C]; RBD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
123D HN(CO)CA0.5 mM [U-99% 15N]; [U-13C]; RBD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
163D HNCO0.5 mM [U-99% 15N]; [U-13C]; RBD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
153D HNCACO0.5 mM [U-99% 15N]; [U-13C]; RBD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
143D HNCACB0.3 mM [U-99% 15N]; [U-13C]; CRD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
133D CBCA(CO)NH0.3 mM [U-99% 15N]; [U-13C]; CRD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
223D HNCA0.3 mM [U-99% 15N]; [U-13C]; CRD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
213D HN(CO)CA0.3 mM [U-99% 15N]; [U-13C]; CRD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
203D HNCO0.3 mM [U-99% 15N]; [U-13C]; CRD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
193D HNCACO0.3 mM [U-99% 15N]; [U-13C]; CRD90% H2O/10% D2O450 mM5.51 atm298Bruker AVANCE III 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III700
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number3000
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger A. T. et.al.
2collectionTopSpinBruker Biospin
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4processingNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5data analysisSparkyGoddard
6peak pickingSparkyGoddard
7structure calculationHADDOCKBonvin
8chemical shift assignmentSparkyGoddard