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 6OQ2 | pdb_00006oq2

NMR Structure of Branched K11/K48-Linked Tri-Ubiquitin


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC120 uM [U-15N-distal11] Branched K11/K48-Linked Tri-Ubiquitin95% H2O/5% D2O0 M6.81 atm298Bruker AVANCE III 600
22D 1H-15N HSQC100 uM [U-15N-distal48] Branched K11/K48-Linked Tri-Ubiquitin95% H2O/5% D2O0 M6.81 atm298Bruker AVANCE III 800
32D 1H-15N HSQC60 uM [U-15N-distal11] Branched K11/K48-Linked Tri-Ubiquitin95% H2O/5% D2O0 M6.81 atm298Bruker AVANCE III 600
42D 1H-15N HSQC110 uM [U-15N-distal48] Branched K11/K48-Linked Tri-Ubiquitin95% H2O/5% D2O0 M6.81 atm298Bruker AVANCE III 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III800
2BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
simulated annealingTHE INITIAL HADDOCK INPUT WAS THE CRYSTAL STRUCTURE OF BRANCHED K11/K48-LINKED TRI-UBIQUITIN (PDB ID 6OQ1). AMBIGUOUS DISTANCE RESTRAINTS WERE FROM CHEMICAL SHIFT PERTURBATIONS AND DISTANCE RESTRAINTS WERE BASED ON PRES.HADDOCK
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number400
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingTopSpinBruker Biospin
2peak pickingSparkyGoddard
3refinementHADDOCKBonvin
4structure calculationHADDOCKBonvin