6NOM
NMR solution structure of Pisum sativum defensin 2 (Psd2) provides evidence for the presence of hydrophobic surface clusters
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
2 | 2D 1H-13C HSQC | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
3 | 3D HNCACB | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
4 | 3D CBCA(CO)NH | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
5 | 3D HNCA | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
6 | 3D HN(CO)CA | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
7 | 3D HNCO | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
8 | 3D HBHA(CO)NH | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
9 | 3D HCCH-TOCSY | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
10 | 2D 1H-13C HSQC aliphatic | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
11 | 2D 1H-1H NOESY | 1 mM [U-13C; U-15N] Psd2 | 90% H2O/10% D2O | 0.012 mM | 5.0 | 1 atm | 25 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Aria2 | CNS |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 20 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. | |
2 | structure calculation | ARIA | Linge, O'Donoghue and Nilges | |
3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
4 | peak picking | CcpNmr Analysis | CCPN | |
5 | collection | TopSpin | Bruker Biospin |