6NOM

NMR solution structure of Pisum sativum defensin 2 (Psd2) provides evidence for the presence of hydrophobic surface clusters


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
22D 1H-13C HSQC1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
33D HNCACB1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
43D CBCA(CO)NH1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
53D HNCA1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
63D HN(CO)CA1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
73D HNCO1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
83D HBHA(CO)NH1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
93D HCCH-TOCSY1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
102D 1H-13C HSQC aliphatic1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
112D 1H-1H NOESY1 mM [U-13C; U-15N] Psd290% H2O/10% D2O0.012 mM5.01 atm25Bruker AVANCE III 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
NMR Refinement
MethodDetailsSoftware
simulated annealingAria2CNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number20
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger A. T. et.al.
2structure calculationARIALinge, O'Donoghue and Nilges
3chemical shift assignmentCcpNmr AnalysisCCPN
4peak pickingCcpNmr AnalysisCCPN
5collectionTopSpinBruker Biospin