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Pseudomonas fluorescens isocyanide hydratase rotating anode 298K
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NON
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 298 23% PEG 3350, 100mM Tris-HCl pH 8.6, 200 mM magnesium chloride and 2 mM dithiotheritol
Crystal Properties Matthews coefficient Solvent content 2.19 43.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.195 α = 90 b = 58.13 β = 112.81 c = 69.12 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE RIGAKU RAXIS IV++ varimax confocal 2018-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.541
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 34.57 99.8 0.058 0.07 0.038 0.997 9.3 3.1 73846
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.48 95.5 0.665 0.811 0.455 0.617 1.1 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3NON 1.45 34.59 70202 3621 99.74 0.11211 0.11017 0.1103 0.14999 0.1495 RANDOM 23.949
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 -0.12 -1.62 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.194 r_dihedral_angle_4_deg 22.341 r_dihedral_angle_3_deg 12.529 r_rigid_bond_restr 9.515 r_dihedral_angle_1_deg 6.071 r_scangle_other 5.485 r_long_range_B_refined 5.064 r_long_range_B_other 4.947 r_scbond_it 4.741 r_scbond_other 4.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.194 r_dihedral_angle_4_deg 22.341 r_dihedral_angle_3_deg 12.529 r_rigid_bond_restr 9.515 r_dihedral_angle_1_deg 6.071 r_scangle_other 5.485 r_long_range_B_refined 5.064 r_long_range_B_other 4.947 r_scbond_it 4.741 r_scbond_other 4.74 r_mcangle_other 3.139 r_mcangle_it 3.13 r_mcbond_it 2.764 r_mcbond_other 2.717 r_angle_refined_deg 1.616 r_angle_other_deg 1.514 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3368 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling REFMAC phasing