X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5281100 mM imidazole/MES pH 6.5 30 mM MgCl2 30 mM CaCl2 10% PEG 20,000 20% PEG MME 550
Crystal Properties
Matthews coefficientSolvent content
2.8656.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 99.55α = 90
b = 99.55β = 90
c = 447.49γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2018-02-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS-II BEAMLINE 17-ID-20.979339NSLS-II17-ID-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.95501000.1610.99912.712.7188611
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.952.072.90.7651.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5U8X1.9549.47179182942999.970.188160.187290.20474RANDOM45.457
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.720.360.72-2.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.893
r_dihedral_angle_4_deg16.292
r_dihedral_angle_3_deg13.001
r_dihedral_angle_1_deg7.83
r_long_range_B_refined3.734
r_long_range_B_other3.658
r_scangle_other2.465
r_mcangle_it1.813
r_mcangle_other1.813
r_scbond_it1.517
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.893
r_dihedral_angle_4_deg16.292
r_dihedral_angle_3_deg13.001
r_dihedral_angle_1_deg7.83
r_long_range_B_refined3.734
r_long_range_B_other3.658
r_scangle_other2.465
r_mcangle_it1.813
r_mcangle_other1.813
r_scbond_it1.517
r_scbond_other1.517
r_angle_refined_deg1.349
r_angle_other_deg1.22
r_mcbond_it1.151
r_mcbond_other1.149
r_chiral_restr0.059
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15805
Nucleic Acid Atoms
Solvent Atoms902
Heterogen Atoms8

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
PHASERphasing