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Structure of L509V CAO1 - growth condition 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5U8X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 281 100 mM imidazole/MES pH 6.5
30 mM MgCl2
30 mM CaCl2
10% PEG 20,000
20% PEG MME 550
Crystal Properties Matthews coefficient Solvent content 2.86 56.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.55 α = 90 b = 99.55 β = 90 c = 447.49 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-2 0.979339 NSLS-II 17-ID-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 100 0.161 0.999 12.7 12.7 188611
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.07 2.9 0.765 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5U8X 1.95 49.47 179182 9429 99.97 0.18816 0.18729 0.1974 0.20474 0.216 RANDOM 45.457
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 0.36 0.72 -2.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.893 r_dihedral_angle_4_deg 16.292 r_dihedral_angle_3_deg 13.001 r_dihedral_angle_1_deg 7.83 r_long_range_B_refined 3.734 r_long_range_B_other 3.658 r_scangle_other 2.465 r_mcangle_it 1.813 r_mcangle_other 1.813 r_scbond_it 1.517
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.893 r_dihedral_angle_4_deg 16.292 r_dihedral_angle_3_deg 13.001 r_dihedral_angle_1_deg 7.83 r_long_range_B_refined 3.734 r_long_range_B_other 3.658 r_scangle_other 2.465 r_mcangle_it 1.813 r_mcangle_other 1.813 r_scbond_it 1.517 r_scbond_other 1.517 r_angle_refined_deg 1.349 r_angle_other_deg 1.22 r_mcbond_it 1.151 r_mcbond_other 1.149 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15805 Nucleic Acid Atoms Solvent Atoms 902 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing