6MXT

Crystal structure of human beta2 adrenergic receptor bound to salmeterol and Nb71


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1LIPIDIC CUBIC PHASE7.5293.1531-34% PEG400, 100 mM HEPES, pH 7.5, 1% 1,2,3-heptanetriol
Crystal Properties
Matthews coefficientSolvent content
3.867.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 178.682α = 90
b = 52.589β = 123.859
c = 125.917γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray77CCDMAR CCD 130 mm2012-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D0.987APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.953092.60.1671.523.31874252.7347764892
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.953.09750.5251.52

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUEPDB entries 4GBR & 4LDE2.9593421352528.51961061681.3823112258418742113590.75589559830.2070991585620.2046251986480.2448645198153.7137652891
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d11.7295598938
f_angle_d0.570762761076
f_chiral_restr0.0213092559887
f_plane_restr0.00270009590516
f_bond_d0.00194998079085
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4539
Nucleic Acid Atoms
Solvent Atoms20
Heterogen Atoms111

Software

Software
Software NamePurpose
HKL-2000data collection
PHENIXrefinement
PHASERphasing
Cootmodel building
SCALEPACKdata scaling
HKL-2000data reduction