6MHP

Crystal structure of BaeC acyltransferase from bacillaene polyketide synthase in Bacillus amyloliquefaciens


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2980.2M Ammonium formate, 25% (w/v) PEG 3350
Crystal Properties
Matthews coefficientSolvent content
1.8433.14

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.069α = 90
b = 50.142β = 90
c = 111.455γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2016-04-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.30.976ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.735099.60.0740.81935.6727508
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.731.7699.30.7130.819

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3RGI1.735026244139999.660.199530.19790.23034RANDOM31.071
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.070.03-0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.768
r_dihedral_angle_4_deg16.618
r_dihedral_angle_3_deg15.84
r_long_range_B_other7.637
r_long_range_B_refined7.633
r_scangle_other6.654
r_dihedral_angle_1_deg5.5
r_scbond_it4.459
r_scbond_other4.458
r_angle_other_deg3.663
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.768
r_dihedral_angle_4_deg16.618
r_dihedral_angle_3_deg15.84
r_long_range_B_other7.637
r_long_range_B_refined7.633
r_scangle_other6.654
r_dihedral_angle_1_deg5.5
r_scbond_it4.459
r_scbond_other4.458
r_angle_other_deg3.663
r_mcangle_it3.2
r_mcangle_other3.199
r_mcbond_it2.456
r_mcbond_other2.456
r_angle_refined_deg1.899
r_chiral_restr0.136
r_bond_refined_d0.02
r_gen_planes_other0.018
r_gen_planes_refined0.01
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2216
Nucleic Acid Atoms
Solvent Atoms62
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
PHASERphasing