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Structure of MOEN5-SSO7D fusion protein in complex with ligand 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5B02
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.1 298 0.2M LI3-CITRATE, 0.3M NACL, 25% W/V PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.59 52.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.856 α = 90 b = 217.336 β = 90 c = 104.159 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2016-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL15A1 1.0 NSRRC BL15A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.23 25 99.7 0.075 0.083 0.035 11.1 5.5 75822
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.23 2.31 99.4 0.607 0.674 0.288 0.806 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5B02 2.23 25 72187 3628 99.52 0.17402 0.17151 0.1791 0.22501 0.2267 RANDOM 45.971
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.06 -1.29 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.845 r_dihedral_angle_4_deg 18.781 r_dihedral_angle_3_deg 18.114 r_long_range_B_other 11.318 r_long_range_B_refined 11.297 r_scangle_other 8.763 r_mcangle_it 6.506 r_mcangle_other 6.505 r_scbond_it 6.373 r_scbond_other 6.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.845 r_dihedral_angle_4_deg 18.781 r_dihedral_angle_3_deg 18.114 r_long_range_B_other 11.318 r_long_range_B_refined 11.297 r_scangle_other 8.763 r_mcangle_it 6.506 r_mcangle_other 6.505 r_scbond_it 6.373 r_scbond_other 6.37 r_dihedral_angle_1_deg 6.146 r_mcbond_it 4.896 r_mcbond_other 4.893 r_angle_refined_deg 1.64 r_angle_other_deg 1.424 r_chiral_restr 0.083 r_gen_planes_refined 0.01 r_bond_refined_d 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8726 Nucleic Acid Atoms Solvent Atoms 560 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing