X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.12980.2M LI3-CITRATE, 0.3M NACL, 25% W/V PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.5952.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 137.856α = 90
b = 217.336β = 90
c = 104.159γ = 90
Symmetry
Space GroupC 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX-3002016-09-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE BL15A11.0NSRRCBL15A1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.232599.70.0750.0830.03511.15.575822
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.232.3199.40.6070.6740.2880.8065.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT5B022.232572187362899.520.174020.171510.22501RANDOM45.971
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.06-1.29-0.77
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.845
r_dihedral_angle_4_deg18.781
r_dihedral_angle_3_deg18.114
r_long_range_B_other11.318
r_long_range_B_refined11.297
r_scangle_other8.763
r_mcangle_it6.506
r_mcangle_other6.505
r_scbond_it6.373
r_scbond_other6.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.845
r_dihedral_angle_4_deg18.781
r_dihedral_angle_3_deg18.114
r_long_range_B_other11.318
r_long_range_B_refined11.297
r_scangle_other8.763
r_mcangle_it6.506
r_mcangle_other6.505
r_scbond_it6.373
r_scbond_other6.37
r_dihedral_angle_1_deg6.146
r_mcbond_it4.896
r_mcbond_other4.893
r_angle_refined_deg1.64
r_angle_other_deg1.424
r_chiral_restr0.083
r_gen_planes_refined0.01
r_bond_refined_d0.009
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8726
Nucleic Acid Atoms
Solvent Atoms560
Heterogen Atoms15

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHASERphasing