6II1

Crystal Structure Analysis of CO form hemoglobin from Bos taurus


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1COUNTER-DIFFUSION6.829325% PEG3,350 0.2 M MgCl2 0.2 M KCl 0.2 M NaCl 0.1 M HEPES pH6.8
Crystal Properties
Matthews coefficientSolvent content
2.1843.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 63.56α = 90
b = 76.283β = 90
c = 109.789γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2702017-11-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12A1.0000Photon FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.3448.8399.80.0760.0790.0210.99920.314.5120044
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.341.3699.61.5171.5720.4090.69414.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6IHX1.3448.83117962199899.80.1380.13740.1753RANDOM20.994
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.711.24-0.52
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free34.501
r_dihedral_angle_2_deg34.09
r_dihedral_angle_4_deg16.541
r_sphericity_bonded14.908
r_dihedral_angle_3_deg11.438
r_dihedral_angle_1_deg5.11
r_rigid_bond_restr2.312
r_angle_refined_deg1.465
r_angle_other_deg1.164
r_chiral_restr0.085
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free34.501
r_dihedral_angle_2_deg34.09
r_dihedral_angle_4_deg16.541
r_sphericity_bonded14.908
r_dihedral_angle_3_deg11.438
r_dihedral_angle_1_deg5.11
r_rigid_bond_restr2.312
r_angle_refined_deg1.465
r_angle_other_deg1.164
r_chiral_restr0.085
r_bond_refined_d0.01
r_gen_planes_refined0.009
r_gen_planes_other0.009
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4294
Nucleic Acid Atoms
Solvent Atoms723
Heterogen Atoms180

Software

Software
Software NamePurpose
XDSdata reduction
Aimlessdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction