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Fifteen minutes iron loaded Rana Catesbeiana H' ferritin variant H54N
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LQH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 281 1.6-2.0 M MgCl2 and 0.1 M bicine pH 9.0
Crystal Properties Matthews coefficient Solvent content 3.26 62.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.72 α = 90 b = 183.72 β = 90 c = 183.72 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-10-08 M SINGLE WAVELENGTH 2 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-10-29 M SINGLE WAVELENGTH 3 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.95372 ESRF BM14 2 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.73893 ELETTRA 5.2R 3 SYNCHROTRON ELETTRA BEAMLINE 5.2R 1.76116 ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 22.44 100 0.073 0.078 0.021 22.3 14.2 58512 2 9.93
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.42 100 0.447 0.48 0.128 6 13.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4LQH 1.35 22.44 55550 2960 99.94 0.11465 0.11326 0.14072 0.154 RANDOM 10.748
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.644 r_dihedral_angle_4_deg 20.392 r_dihedral_angle_3_deg 13.33 r_dihedral_angle_1_deg 4.547 r_long_range_B_refined 3.372 r_long_range_B_other 2.025 r_scangle_other 1.759 r_rigid_bond_restr 1.624 r_angle_other_deg 1.585 r_angle_refined_deg 1.481
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.644 r_dihedral_angle_4_deg 20.392 r_dihedral_angle_3_deg 13.33 r_dihedral_angle_1_deg 4.547 r_long_range_B_refined 3.372 r_long_range_B_other 2.025 r_scangle_other 1.759 r_rigid_bond_restr 1.624 r_angle_other_deg 1.585 r_angle_refined_deg 1.481 r_scbond_it 1.414 r_scbond_other 1.414 r_mcangle_it 1.133 r_mcangle_other 1.133 r_mcbond_it 0.927 r_mcbond_other 0.924 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1413 Nucleic Acid Atoms Solvent Atoms 361 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction XDS data reduction SCALA data scaling MOLREP phasing